omidb.image¶

class omidb.image.Image(id: str, dcm_path: pathlib.Path, json_path: pathlib.Path, marks: Optional[List[omidb.mark.Mark]], _dcm: Optional[pydicom.dataset.FileDataset] = None, _json: Optional[Dict[str, Any]] = None)[source]¶

Container for a mammogram, stored in the DICOM format. An image can have zero or more marks for one or many lesions.

Parameters

id (str) – SOP Instance UID, a unique identifier
dcm_path (Path) – Path to the dicom image
json_path (Path) – Path to the JSON file storing DICOM metadata
marks (Optional[List[Mark]]) – A list of marks or annotations, represented by omidb.mark.Mark

property attributes¶

Access DICOM metadata via the JSON representation

Return type: Optional[Dict[str, Any]]

property dcm¶

Returns a pydicom.dataset.FileDataset, representing a parsed DICOM file

Return type: FileDataset

dcm_tags(tags)[source]¶

Returns a pydicom.dataset.FileDataset, with only the specified tags of a parsed DICOM file and no pixel data

Return type: FileDataset

plot(ax=None)[source]¶

Plot the dicom

Return type: AxesImage